{+ These parameters superseed any values entered into your INP files +} {+ begin block parameter definition +} define( {* PMB (c) 2003 MAW -- Stereo Chemistry Optimization ----------------------*} {* This scale factor optimizes the x-ray weight (wa) to *} {* yield bond and angle rmsd equivalent to Engh & Huber values. The *} {* optimal Engh & Huber bond rmsd is 0.022 A and the optimal omega *} {* angle rmsd is 3.00 deg *} {* *} {* Note: wa_scale is updated by PMB_REFINE using the -s flag. Manualy *} {* reset it to 1.000 when starting a new refinement *} {PMB_BONDS===>} bond_trgt=0.022; {PMB_SCALE===>} wa_scale= 1.000; {* Uncomment these parameters if you want to make them UNIVERSAL. *} {* Otherwise edit them in the individual INP files. *} !PMB {NCS_DEF===>} ncs_infile="NCS.def"; {* PMB (c) 2004 MAW - BVSIG an improved bfactor model ----------------*} {* BVSIGma values may vary from 3 to 5 depending on data quality. *} {* Smaller values of BVSIma will yield smaller variation in B-factors. *} {* The optimal BVSIGma value is 4.0. If bvsig_scale <0 then fixed *} {* B-factor restraints will be used. *} {+ SigmaB target +} !PMB {BVSIG_TARGET===>} bvsig_scale=4.0; ) {- end block parameter definition -}